I actually clipped the bottom of the lines off, follow this video here, for whatever reason the drain lines are taspered at the bottom. Road gunk + crap from the trees going down the drains clog them.
Once I did this, and the 5 second push on the button trick to reset the moon roof, everything was fine.
To recalibrate the sunroof you:
1: hit "vent" button till goes to full vent then release button
2: hit vent button 2nd time, for 5 seconds
It will then recalibrate itself...